rttn protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

rttn

Rotatin. (2121 aa)

Predicted Functional Partners:

cep85

0.863

acot11

0.827

grk4

0.827

cenpj

0.765

cep120

0.694

LOC101155771

0.691

poc5

0.691

cep76

0.678

H2LDV5_ORYLA

0.662

cd226

0.609

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2LDV5_ORYLA	cenpj	ENSORLP00000004119	ENSORLP00000044011	Uncharacterized protein.	Centromere protein J.	0.731
H2LDV5_ORYLA	cep120	ENSORLP00000004119	ENSORLP00000021375	Uncharacterized protein.	Centrosomal protein 120.	0.734
H2LDV5_ORYLA	cep76	ENSORLP00000004119	ENSORLP00000003183	Uncharacterized protein.	Centrosomal protein 76.	0.854
H2LDV5_ORYLA	cep85	ENSORLP00000004119	ENSORLP00000005699	Uncharacterized protein.	Centrosomal protein 85.	0.896
H2LDV5_ORYLA	poc5	ENSORLP00000004119	ENSORLP00000035424	Uncharacterized protein.	POC5 centriolar protein homolog (Chlamydomonas).	0.622
H2LDV5_ORYLA	rttn	ENSORLP00000004119	ENSORLP00000009800	Uncharacterized protein.	Rotatin.	0.662
LOC101155771	rttn	ENSORLP00000021475	ENSORLP00000009800	PPP1R35_C domain-containing protein.	Rotatin.	0.691
acot11	grk4	ENSORLP00000004904	ENSORLP00000027792	Acyl-coenzyme A thioesterase 11.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.656
acot11	rttn	ENSORLP00000004904	ENSORLP00000009800	Acyl-coenzyme A thioesterase 11.	Rotatin.	0.827
cd226	rttn	ENSORLP00000045799	ENSORLP00000009800	CD226 molecule.	Rotatin.	0.609
cenpj	H2LDV5_ORYLA	ENSORLP00000044011	ENSORLP00000004119	Centromere protein J.	Uncharacterized protein.	0.731
cenpj	cep120	ENSORLP00000044011	ENSORLP00000021375	Centromere protein J.	Centrosomal protein 120.	0.506
cenpj	cep76	ENSORLP00000044011	ENSORLP00000003183	Centromere protein J.	Centrosomal protein 76.	0.662
cenpj	poc5	ENSORLP00000044011	ENSORLP00000035424	Centromere protein J.	POC5 centriolar protein homolog (Chlamydomonas).	0.514
cenpj	rttn	ENSORLP00000044011	ENSORLP00000009800	Centromere protein J.	Rotatin.	0.765
cep120	H2LDV5_ORYLA	ENSORLP00000021375	ENSORLP00000004119	Centrosomal protein 120.	Uncharacterized protein.	0.734
cep120	cenpj	ENSORLP00000021375	ENSORLP00000044011	Centrosomal protein 120.	Centromere protein J.	0.506
cep120	cep76	ENSORLP00000021375	ENSORLP00000003183	Centrosomal protein 120.	Centrosomal protein 76.	0.736
cep120	cep85	ENSORLP00000021375	ENSORLP00000005699	Centrosomal protein 120.	Centrosomal protein 85.	0.540
cep120	poc5	ENSORLP00000021375	ENSORLP00000035424	Centrosomal protein 120.	POC5 centriolar protein homolog (Chlamydomonas).	0.766