Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tmem38aTransmembrane protein 38A. (293 aa)    
Predicted Functional Partners:
LOC101174926
Docking protein 2.
    
   0.872
rhbdd1
Rhomboid domain containing 1.
      
 0.749
klhl31
Kelch-like family member 31.
   
  
 0.747
tmem221
Si:ch211-125m10.6.
   
  
 0.719
smim7
Small integral membrane protein 7.
      
 0.700
dhrs7
Dehydrogenase/reductase (SDR family) member 7; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
  
 0.696
tmem70
Transmembrane protein 70.
      
 0.691
PLPP7
Phospholipid phosphatase 7 (inactive).
   
  
 0.685
Pcp2
Uncharacterized protein.
    
   0.658
Tmem223
Transmembrane protein 223.
      
 0.654
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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