STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101159853Uncharacterized protein. (613 aa)    
Predicted Functional Partners:
cwc25
CWC25 spliceosome associated protein homolog.
   
    0.609
RUBCNL
Rubicon like autophagy enhancer.
   
    0.609
c11h1orf109
C19h1orf109 homolog (H. sapiens).
   
    0.609
etfa
Electron transfer flavoprotein subunit alpha.
    
 0.604
hadh
Hydroxyacyl-CoA dehydrogenase.
  
 
 0.603
cryl1
Crystallin, lambda 1.
  
 
 0.602
ftsj1
FtsJ RNA 2'-O-methyltransferase 1.
   
    0.592
LOC101175409
Limb and CNS expressed 1.
   
    0.576
LIX1L
Limb and CNS expressed 1 like.
   
    0.576
acot13
Acyl-CoA thioesterase 13.
   
 
 0.570
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.