Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101155575Uncharacterized protein. (1806 aa)    
Predicted Functional Partners:
thyn1
Thymocyte nuclear protein 1.
      
 0.555
huwe1
HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1.
    
   0.510
dvl3
Dishevelled segment polarity protein 3a.
    
 0.475
dvl2
Dishevelled segment polarity protein 2.
    
 0.475
dvl1
Dishevelled segment polarity protein 1a.
    
 0.475
PLEKHG1
Pleckstrin homology and RhoGEF domain containing G1.
      
 0.463
ENSORLP00000032656
Uncharacterized protein.
    
 
 0.461
phox2b
Paired like homeobox 2Bb.
      
 0.431
LOC101175352
Uncharacterized protein.
  
 
   0.416
txndc12
Thioredoxin domain containing 12 (endoplasmic reticulum).
    
 0.408
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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