etgase protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

etgase

TGc domain-containing protein. (739 aa)

Predicted Functional Partners:

LOC101170246

0.595

serpind1

0.533

proc

0.529

LOC105357676

0.526

LOC101157887

0.526

SCCPDH

0.507

stil

0.504

serpine2

0.500

egfl7

0.482

fga

0.462

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101157887	etgase	ENSORLP00000037636	ENSORLP00000009823	Uncharacterized protein.	TGc domain-containing protein.	0.526
LOC101157887	fga	ENSORLP00000037636	ENSORLP00000003045	Uncharacterized protein.	Fibrinogen alpha chain.	0.740
LOC101170246	etgase	ENSORLP00000033975	ENSORLP00000009823	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	TGc domain-containing protein.	0.595
LOC101170246	fga	ENSORLP00000033975	ENSORLP00000003045	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Fibrinogen alpha chain.	0.998
LOC101170246	proc	ENSORLP00000033975	ENSORLP00000008456	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Protein C (inactivator of coagulation factors Va and VIIIa), a.	0.991
LOC101170246	serpind1	ENSORLP00000033975	ENSORLP00000002789	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Serpin peptidase inhibitor, clade D (heparin cofactor), member 1; Belongs to the serpin family.	0.998
LOC101170246	serpine2	ENSORLP00000033975	ENSORLP00000042714	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2; Belongs to the serpin family.	0.985
LOC101170246	stil	ENSORLP00000033975	ENSORLP00000017607	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	SERPIN domain-containing protein; Belongs to the serpin family.	0.999
LOC105357676	etgase	ENSORLP00000032895	ENSORLP00000009823	Uncharacterized protein.	TGc domain-containing protein.	0.526
LOC105357676	fga	ENSORLP00000032895	ENSORLP00000003045	Uncharacterized protein.	Fibrinogen alpha chain.	0.740
SCCPDH	etgase	ENSORLP00000014101	ENSORLP00000009823	Saccharopine dehydrogenase a, tandem duplicate 1.	TGc domain-containing protein.	0.507
egfl7	etgase	ENSORLP00000031334	ENSORLP00000009823	EGF-like-domain, multiple 7.	TGc domain-containing protein.	0.482
etgase	LOC101157887	ENSORLP00000009823	ENSORLP00000037636	TGc domain-containing protein.	Uncharacterized protein.	0.526
etgase	LOC101170246	ENSORLP00000009823	ENSORLP00000033975	TGc domain-containing protein.	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	0.595
etgase	LOC105357676	ENSORLP00000009823	ENSORLP00000032895	TGc domain-containing protein.	Uncharacterized protein.	0.526
etgase	SCCPDH	ENSORLP00000009823	ENSORLP00000014101	TGc domain-containing protein.	Saccharopine dehydrogenase a, tandem duplicate 1.	0.507
etgase	egfl7	ENSORLP00000009823	ENSORLP00000031334	TGc domain-containing protein.	EGF-like-domain, multiple 7.	0.482
etgase	fga	ENSORLP00000009823	ENSORLP00000003045	TGc domain-containing protein.	Fibrinogen alpha chain.	0.462
etgase	proc	ENSORLP00000009823	ENSORLP00000008456	TGc domain-containing protein.	Protein C (inactivator of coagulation factors Va and VIIIa), a.	0.529
etgase	serpind1	ENSORLP00000009823	ENSORLP00000002789	TGc domain-containing protein.	Serpin peptidase inhibitor, clade D (heparin cofactor), member 1; Belongs to the serpin family.	0.533