STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hmmrHyaluronan-mediated motility receptor (RHAMM). (1034 aa)    
Predicted Functional Partners:
INSC
INSC spindle orientation adaptor protein.
      
 0.801
sh3pxd2b
SH3 and PX domains 2B.
     
 0.727
LOC101159141
Proline rich 12a.
      
 0.678
scaf1
SR-related CTD-associated factor 1.
    
 
 0.668
LOC101172288
Amyloid beta (A4) precursor protein b.
    
 0.615
APP
Amyloid beta precursor protein.
    
 0.615
rad54l
RAD54 like.
   
 0.598
pif1
ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.
   
 
 0.573
fanci
FA complementation group I.
   
 
 0.550
nuf2
UF2 component of NDC80 kinetochore complex.
   
 0.548
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.