STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hmmrHyaluronan-mediated motility receptor (RHAMM). (1034 aa)    
Predicted Functional Partners:
sh3pxd2b
SH3 and PX domains 2B.
     
 0.786
nuf2
UF2 component of NDC80 kinetochore complex.
   
 0.770
scaf1
SR-related CTD-associated factor 1.
      
 0.746
INSC
INSC spindle orientation adaptor protein.
     
 0.722
dlgap5
Discs, large (Drosophila) homolog-associated protein 5.
   
 0.718
LOC101172288
Amyloid beta (A4) precursor protein b.
    
 0.702
APP
Amyloid beta precursor protein.
    
 0.702
aplp2
Amyloid beta (A4) precursor-like protein 2.
    
 0.669
plk4
Polo-like kinase 4 (Drosophila).
   
 0.659
cep55
Centrosomal protein 55 like.
   
 
 0.656
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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