STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101170085FYVE, RhoGEF and PH domain containing 5a. (1495 aa)    
Predicted Functional Partners:
LOC101162152
Ras-related GTP binding A.
    
 
 0.511
uhmk1
U2AF homology motif (UHM) kinase 1.
      
 0.498
rptor
Regulatory associated protein of MTOR, complex 1.
    
 
 0.456
LOC110014938
Single-pass membrane protein with aspartate-rich tail 1b.
    
 0.454
smdt1
Single-pass membrane protein with aspartate-rich tail 1a.
    
 0.454
ENSORLP00000042440
Uncharacterized protein.
    
 0.454
LOC101160267
Mitochondrial calcium uniporter dominant negative beta subunit.
    
 0.437
Mcu
Mitochondrial calcium uniporter.
    
 0.437
mcub
MCU domain-containing protein.
    
 0.437
micu1
Mitochondrial calcium uptake 1.
   
 0.426
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.