STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101173058Homeobox C12a. (272 aa)    
Predicted Functional Partners:
stimate
Musculoskeletal, embryonic nuclear protein 1b.
      
 0.591
LOC101171404
Musculoskeletal, embryonic nuclear protein 1a.
      
 0.591
LOC101165144
Urotensin 2, alpha.
      
 0.583
mgrn1
Mahogunin, ring finger 1b.
      
 0.535
ppard
Uncharacterized protein.
    
 
 0.506
hoxc6
Homeobox C6a.
    
 
0.406
zic2
Zic family member 2 (odd-paired homolog, Drosophila), a.
    
 
 0.400
bmp3
Bone morphogenetic protein 3.
      
 0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.