STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101173058Homeobox C12a. (272 aa)    
Predicted Functional Partners:
stimate
Musculoskeletal, embryonic nuclear protein 1b.
      
 0.651
LOC101165144
Urotensin 2, alpha.
      
 0.651
LOC101171404
Musculoskeletal, embryonic nuclear protein 1a.
      
 0.651
hand2
Heart and neural crest derivatives expressed 2.
    
 
 0.614
taf10
Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.
      
 0.603
mgrn1
Mahogunin, ring finger 1b.
      
 0.531
ppp1r36
Uncharacterized protein.
      
 0.519
dnajc24
Uncharacterized protein.
      
 0.498
pdhx
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
    
 
 0.496
ezh2
Uncharacterized protein.
    
 
 0.489
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.