STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hoxc11Homeobox C11a. (314 aa)    
Predicted Functional Partners:
LOC100049282
Retinoic acid receptor, alpha a.
    
 
 0.681
brca1
Uncharacterized protein.
      
 0.678
pax2
Paired box 2b.
    
 
 0.534
eya1
Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family.
    
 
 0.520
rab27b
RAB27B, member RAS oncogene family.
      
 0.494
hoxd9
HoxD10a.
   
  
0.467
H2LQH7_ORYLA
RAB9A, member RAS oncogene family.
      
 0.462
RAB9A
RAB9A, member RAS oncogene family.
      
 0.462
six2
SIX homeobox 2a.
      
 0.461
RAB19
RAB19, member RAS oncogene family.
      
 0.453
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.