Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hoxc11Homeobox C11a. (314 aa)    
Predicted Functional Partners:
rab27b
RAB27B, member RAS oncogene family.
      
 0.527
sall1
Spalt-like transcription factor 1a.
    
 
 0.501
hoxd9
HoxD10a.
   
  
0.497
RAB8A
RAB8A, member RAS oncogene family.
      
 0.479
LOC101170877
RAB8A, member RAS oncogene family.
      
 0.479
H2LQH7_ORYLA
RAB9A, member RAS oncogene family.
      
 0.476
RAB9A
RAB9A, member RAS oncogene family.
      
 0.476
rab5c
RAB5C, member RAS oncogene family.
      
 0.472
hoxc8
Homeobox C10a.
   
  
 0.460
kat6a
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
 
 0.449
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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