STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clrn2Clarin 2. (233 aa)    
Predicted Functional Partners:
LOC101169868
ELMO domain-containing protein.
    
 0.716
LOC101156647
Engulfment and cell motility 2.
    
 0.716
LOC101173701
Engulfment and cell motility 3.
    
 0.716
crk
CRK proto-oncogene, adaptor protein.
    
 0.706
crkl
V-crk avian sarcoma virus CT10 oncogene homolog-like.
    
 0.706
LOC110016423
Uncharacterized protein.
    
 0.706
GRXCR2
Glutaredoxin and cysteine rich domain containing 2.
   
  
 0.674
rchy1
Ring finger and CHY zinc finger domain containing 1.
      
 0.482
LOC105356814
Stereocilin 1.
     
 0.478
ENSORLP00000036342
Stereocilin.
     
 0.478
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.