Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC101161576RNA binding motif protein 24b. (237 aa)    
Predicted Functional Partners:
vmhc
Ventricular myosin heavy chain; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
      
 0.612
LOC101163271
RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.
  
 
0.602
ELAVL2
ELAV-like protein; Belongs to the RRM elav family.
  
   
 0.584
elavl3
ELAV-like protein; Belongs to the RRM elav family.
  
   
 0.575
LOC101172398
ELAV-like protein; Belongs to the RRM elav family.
  
   
 0.572
LOC101157754
RNA binding fox-1 homolog 2.
  
 
0.572
LOC101170313
ELAV-like protein; Belongs to the RRM elav family.
  
   
 0.569
elavl4
ELAV-like protein; Belongs to the RRM elav family.
  
   
 0.554
LOC101159019
RRM domain-containing protein.
   
 
 0.516
LOC101157868
Transformer 2 alpha homolog.
  
   
 0.512
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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