Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2LV15_ORYLAPA14 domain-containing protein. (683 aa)    
Predicted Functional Partners:
pkd1
Uncharacterized protein.
      
 0.690
LOC101155476
Rho GTPase activating protein 20.
   
  
 0.598
ndufaf2
NADH:ubiquinone oxidoreductase complex assembly factor 2.
      
 0.594
TCERG1
Transcription elongation regulator 1.
      
 0.594
SAMD9
Sterile alpha motif domain containing 9.
      
 0.594
lrrc20
Leucine rich repeat containing 20.
     
 0.522
hnf1b
HNF1 homeobox Ba.
   
 
 0.509
tmigd1
Transmembrane and immunoglobulin domain containing 1.
      
 0.504
LOC111947115
Uncharacterized protein.
   
  
 0.503
rp1l1
Uncharacterized protein.
   
  
 0.503
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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