Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lap3Leucine aminopeptidase 3. (516 aa)    
Predicted Functional Partners:
got2
Aspartate aminotransferase.
   
 0.928
pycr3
Pyrroline-5-carboxylate reductase; Belongs to the pyrroline-5-carboxylate reductase family.
    
 0.927
gclc
Glutamate-cysteine ligase, catalytic subunit.
     
 0.926
ggt1a
Uncharacterized protein.
     
 0.926
ggt1b
Uncharacterized protein.
     
 0.926
gss
Glutathione synthetase.
   
 
 0.916
ggtl1a
Uncharacterized protein.
     
 0.910
LOC101161114
Uncharacterized protein.
     
 0.910
ggtl1b
Uncharacterized protein.
     
 0.910
ggt7
Uncharacterized protein.
     
 0.910
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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