STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hoxc9Homeobox protein Hox-C9; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Abd-B homeobox family. (262 aa)    
Predicted Functional Partners:
hoxc6
Homeobox C6a.
   
 
0.959
pbx1
Homeobox domain-containing protein.
    
 
 0.753
LOC101160104
Pre-B-cell leukemia homeobox 1b.
    
 
 0.753
LOC101159440
Pre-B-cell leukemia transcription factor 4.
    
 
 0.753
pbx3
Homeobox domain-containing protein.
    
 
 0.753
LOC101172525
Pre-B-cell leukemia homeobox 2.
    
 
 0.753
LOC101164012
Homeobox B6b.
   
 
0.650
hoxc8-2
HoxC8a.
   
 
0.633
hoxc4
Homeobox protein Hox-C4; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Antp homeobox family. Deformed subfamily.
   
 
0.600
LOC101155275
Homeobox domain-containing protein.
   
 
0.599
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.