hoxc8-2 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

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Textmining

[Homology]

Score

hoxc8-2

HoxC8a. (250 aa)

Predicted Functional Partners:

ilf3

0.779

LOC101164012

0.715

hoxc9

0.691

LOC101155275

0.674

pbx1

0.608

LOC101160104

0.608

LOC101159440

0.608

pbx3

0.608

LOC101172525

0.608

nkx2-5

0.606

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101155275	LOC101159440	ENSORLP00000021317	ENSORLP00000030537	Homeobox domain-containing protein.	Pre-B-cell leukemia transcription factor 4.	0.753
LOC101155275	LOC101160104	ENSORLP00000021317	ENSORLP00000020891	Homeobox domain-containing protein.	Pre-B-cell leukemia homeobox 1b.	0.753
LOC101155275	LOC101172525	ENSORLP00000021317	ENSORLP00000039311	Homeobox domain-containing protein.	Pre-B-cell leukemia homeobox 2.	0.753
LOC101155275	hoxc8-2	ENSORLP00000021317	ENSORLP00000009957	Homeobox domain-containing protein.	HoxC8a.	0.674
LOC101155275	hoxc9	ENSORLP00000021317	ENSORLP00000009954	Homeobox domain-containing protein.	Homeobox protein Hox-C9; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Abd-B homeobox family.	0.669
LOC101155275	nkx2-5	ENSORLP00000021317	ENSORLP00000009208	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.470
LOC101155275	pbx1	ENSORLP00000021317	ENSORLP00000017846	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.753
LOC101155275	pbx3	ENSORLP00000021317	ENSORLP00000034111	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.753
LOC101159440	LOC101155275	ENSORLP00000030537	ENSORLP00000021317	Pre-B-cell leukemia transcription factor 4.	Homeobox domain-containing protein.	0.753
LOC101159440	LOC101164012	ENSORLP00000030537	ENSORLP00000015504	Pre-B-cell leukemia transcription factor 4.	Homeobox B6b.	0.753
LOC101159440	hoxc8-2	ENSORLP00000030537	ENSORLP00000009957	Pre-B-cell leukemia transcription factor 4.	HoxC8a.	0.608
LOC101159440	hoxc9	ENSORLP00000030537	ENSORLP00000009954	Pre-B-cell leukemia transcription factor 4.	Homeobox protein Hox-C9; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Abd-B homeobox family.	0.747
LOC101160104	LOC101155275	ENSORLP00000020891	ENSORLP00000021317	Pre-B-cell leukemia homeobox 1b.	Homeobox domain-containing protein.	0.753
LOC101160104	LOC101164012	ENSORLP00000020891	ENSORLP00000015504	Pre-B-cell leukemia homeobox 1b.	Homeobox B6b.	0.753
LOC101160104	hoxc8-2	ENSORLP00000020891	ENSORLP00000009957	Pre-B-cell leukemia homeobox 1b.	HoxC8a.	0.608
LOC101160104	hoxc9	ENSORLP00000020891	ENSORLP00000009954	Pre-B-cell leukemia homeobox 1b.	Homeobox protein Hox-C9; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Abd-B homeobox family.	0.747
LOC101160104	pbx1	ENSORLP00000020891	ENSORLP00000017846	Pre-B-cell leukemia homeobox 1b.	Homeobox domain-containing protein.	0.900
LOC101164012	LOC101159440	ENSORLP00000015504	ENSORLP00000030537	Homeobox B6b.	Pre-B-cell leukemia transcription factor 4.	0.753
LOC101164012	LOC101160104	ENSORLP00000015504	ENSORLP00000020891	Homeobox B6b.	Pre-B-cell leukemia homeobox 1b.	0.753
LOC101164012	LOC101172525	ENSORLP00000015504	ENSORLP00000039311	Homeobox B6b.	Pre-B-cell leukemia homeobox 2.	0.753