Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101174425Homeobox C5a. (228 aa)    
Predicted Functional Partners:
HOXA7
Homeobox A7.
   
   0.937
LOC101169786
HoxB5a.
   
   0.893
hoxb5
Homeobox B5b.
   
   0.893
hoxc4
Homeobox protein Hox-C4; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Antp homeobox family. Deformed subfamily.
   
 
 0.888
hoxc6
Homeobox C6a.
   
 
 0.866
H2MT59_ORYLA
Homeobox D4a.
   
 
0.846
LOC101164012
Homeobox B6b.
   
 
 0.766
LOC101155275
Homeobox domain-containing protein.
   
 
 0.766
polr2g
Polymerase (RNA) II (DNA directed) polypeptide G-like.
    
  0.719
fgf5
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
   
 
 0.703
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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