STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stau2Staufen double-stranded RNA binding protein 2. (695 aa)    
Predicted Functional Partners:
UPF1
UPF1 RNA helicase and ATPase.
    
 
 0.962
rps6
Ribosomal protein S6.
    
 
 0.913
dicer1
Dicer 1, ribonuclease type III; Belongs to the helicase family. Dicer subfamily.
    
 0.902
ilf3
Interleukin enhancer binding factor 3b.
    
 
 0.895
dhx9
DEAH (Asp-Glu-Ala-His) box helicase 9.
    
 
 0.884
Gpatch4
G-patch domain-containing protein.
    
   0.877
rplp0
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
    
   0.858
LOC100144382
Eukaryotic translation initiation factor 2-alpha kinase 2.
    
 0.805
LOC110016550
Eukaryotic translation initiation factor 2-alpha kinase 2.
    
 0.805
fmr1
Fragile X mental retardation 1.
   
 
 0.804
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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