Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
nit1Nitrilase 1. (314 aa)    
Predicted Functional Partners:
pola2
DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.
      
 0.752
tdp2
Tyrosyl-DNA phosphodiesterase 2b.
      
 0.717
foxred1
FAD-dependent oxidoreductase domain containing 1.
      
 0.692
ung
Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
     
 0.690
rnls
Renalase, FAD-dependent amine oxidase.
      
 0.619
amd1
S-adenosylmethionine decarboxylase proenzyme.
    
 
 0.610
LOC101168042
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
  
 0.602
ENSORLP00000044940
Purkinje cell protein 4 like 1.
      
 0.600
sms
Spermine synthase.
  
 
 0.574
srm
Spermidine synthase; Belongs to the spermidine/spermine synthase family.
  
 
 0.574
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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