Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sox9HMG box domain-containing protein. (476 aa)    
Predicted Functional Partners:
dmy
Doublesex- and mab-3-related transcription factor 1; Transcription factor that acts both as a transcription.
    
 0.888
runx2
Runt-related transcription factor.
   
 0.884
foxl2
Forkhead box L2.
    
 0.834
amh
Anti-muellerian hormone.
    
 0.773
gbx2
Gastrulation brain homeobox 2.
    
 0.763
nr5a1
FTZ-F1.
    
 0.759
rspo1
Uncharacterized protein.
    
 
 0.757
LOC101160370
Runt-related transcription factor.
   
 0.737
gata4
GATA binding protein 4.
    
 0.733
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.724
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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