STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pex11gPeroxisomal biogenesis factor 11 gamma. (235 aa)    
Predicted Functional Partners:
LOC101171574
Peroxisomal biogenesis factor 11 alpha.
    
 0.956
pex11b
Peroxisomal biogenesis factor 11 beta.
    
 0.956
pex13
Peroxisomal biogenesis factor 13.
   
 0.953
pex19
Peroxisomal biogenesis factor 19.
   
 0.951
pex12
Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.
   
 0.943
pex14
Peroxisomal biogenesis factor 14.
    
 0.900
pex3
Peroxisomal biogenesis factor 3.
   
 0.878
fam185a
Family with sequence similarity 185 member A.
    
 0.846
pex10
Peroxisomal biogenesis factor 10.
    
 
 0.800
pex16
Peroxisomal membrane protein PEX16.
   
 
 0.775
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.