STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl7Ribosomal protein L7. (245 aa)    
Predicted Functional Partners:
rpl4
Ribosomal protein L4.
  
 0.997
fau
40S ribosomal protein S30.
   
 0.997
rpl36
60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.
   
 0.996
rpl23a
Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
  
 0.996
rpl9
Ribosomal protein L9.
  
 0.996
rpl30
Ribosomal protein L30.
   
 0.996
Rpl35
Ribosomal protein L35.
  
 0.996
rpl39
Ribosomal protein L39.
   
 0.996
rpl32
Ribosomal protein L32.
  
 0.996
rpl21
Ribosomal protein L21.
   
 0.996
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.