STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2LV82_ORYLASi:dkey-24l11.2. (416 aa)    
Predicted Functional Partners:
ENSORLP00000030517
CHY-type domain-containing protein.
 
 
   0.933
exosc8
Exosome component 8.
   
  0.761
xrn1
5'-3' exoribonuclease 1.
    
 0.723
cnot1
CCR4-NOT transcription complex, subunit 1.
    
 
 0.663
dcp2
Decapping mRNA 2.
   
 0.565
ENSORLP00000027141
DCP2 domain-containing protein.
   
 0.565
exosc2
Exosome component 2.
    
 0.543
exosc5
Exosome component 5.
    
 0.527
dcp1a
Decapping mRNA 1A.
    
 0.515
dcp1b
Decapping mRNA 1B.
    
 0.515
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.