Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
H2LV82_ORYLASi:dkey-24l11.2. (416 aa)    
Predicted Functional Partners:
ENSORLP00000030517
CHY-type domain-containing protein.
 
 
   0.933
xrn1
5'-3' exoribonuclease 1.
   
 0.772
exosc8
Exosome component 8.
   
  0.686
cnot1
CCR4-NOT transcription complex, subunit 1.
    
 0.678
mapkapk5
MAPK activated protein kinase 5.
    
 0.535
LOC101159256
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 0.535
MAPKAPK2
MAPK activated protein kinase 2a; Belongs to the protein kinase superfamily.
    
 0.535
dcp1a
Decapping mRNA 1A.
    
 0.527
dcp1b
Decapping mRNA 1B.
    
 0.527
dcp2
Decapping mRNA 2.
   
 0.509
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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