Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC101172155Si:dkey-238f9.1. (143 aa)    
Predicted Functional Partners:
trpa1
Transient receptor potential cation channel, subfamily A, member 1b; Belongs to the transient receptor (TC 1.A.4) family.
      
 0.570
nxph2
Neurexophilin; May be signaling molecules that resemble neuropeptides.
  
  
 0.562
LOC101170109
Neurexophilin; May be signaling molecules that resemble neuropeptides.
  
  
 0.555
NXPH3
Neurexophilin 3.
  
  
 0.534
ENSORLP00000031641
Zgc:153675.
  
     0.528
phf24
PHD finger protein 24.
   
  
 0.523
LOC101162070
Sodium channel, voltage-gated, type I, beta a.
  
   
 0.522
H2MEF6_ORYLA
Melanocortin 4 receptor.
  
     0.517
MFAP3
Microfibril associated protein 3.
  
     0.509
tubgcp5
Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.
      
 0.494
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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