STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sox8SRY-box containing gene 8. (465 aa)    
Predicted Functional Partners:
dmy
Doublesex- and mab-3-related transcription factor 1; Transcription factor that acts both as a transcription.
    
 0.748
nr5a1
FTZ-F1.
    
 0.647
rspo1
Uncharacterized protein.
   
 
 0.634
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.601
egr2
Early growth response 2b.
    
 0.593
wnt4
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
   
 
 0.588
foxl2
Forkhead box L2.
   
 0.587
nr5a2
Uncharacterized protein.
    
 0.575
runx2
Runt-related transcription factor.
   
 0.558
gata4
GATA binding protein 4.
    
 0.540
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.