STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101174914Uncharacterized protein. (329 aa)    
Predicted Functional Partners:
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.960
LOC101167466
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.960
hnrnpm
Heterogeneous nuclear ribonucleoprotein M.
   
 0.957
hnrnpu
Heterogeneous nuclear ribonucleoprotein Ub.
   
 0.947
LOC101167735
RRM domain-containing protein.
   
 0.942
LOC101163114
RRM domain-containing protein.
   
 0.942
rbmx
RNA binding motif protein X-linked.
  
0.937
hnrnpa3
Heterogeneous nuclear ribonucleoprotein A3.
  
 
0.914
LOC101163660
RRM domain-containing protein.
  
 0.749
LOC100049528
Serine and arginine rich splicing factor 2a.
  
 0.741
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.