STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101174914Uncharacterized protein. (329 aa)    
Predicted Functional Partners:
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.971
LOC101167466
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.971
hnrnpm
Heterogeneous nuclear ribonucleoprotein M.
   
 0.970
hnrnpu
Heterogeneous nuclear ribonucleoprotein Ub.
   
 0.963
rbmx
RNA binding motif protein X-linked.
  
0.962
LOC101167735
RRM domain-containing protein.
   
 0.962
LOC101163114
RRM domain-containing protein.
   
 0.962
hnrnpa3
Heterogeneous nuclear ribonucleoprotein A3.
  
  
 
0.901
LOC101163660
RRM domain-containing protein.
  
 0.745
LOC100049528
Serine and arginine rich splicing factor 2a.
  
 0.737
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.