STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nhlrc1RING-type domain-containing protein. (402 aa)    
Predicted Functional Partners:
epm2a
EPM2A glucan phosphatase, laforin.
    
 0.996
adam23
ADAM metallopeptidase domain 23.
      
 0.870
agl
Amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase b.
   
 
 0.779
gys2
Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.
    
 0.720
gys1
Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.
    
 0.720
FSD2
Fibronectin type III and SPRY domain containing 2.
      
 0.708
bspry
Uncharacterized protein.
      
 0.693
RNF207
Ring finger protein 207.
      
 0.692
stub1
STIP1 homology and U-Box containing protein 1.
    
 
 0.677
dhx57
DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57.
    
 0.613
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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