c17h5orf22 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

c17h5orf22

Zgc:56556. (475 aa)

Predicted Functional Partners:

wbp11

0.767

trmt13

0.700

c11h1orf109

0.630

LOC101173766

0.629

ELOF1

0.629

pqbp1

0.628

tpgs2

0.611

Saysd1

0.608

fbxo47

0.606

cwc25

0.606

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ELOF1	c17h5orf22	ENSORLP00000020714	ENSORLP00000010044	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	Zgc:56556.	0.629
LOC101173766	c17h5orf22	ENSORLP00000004473	ENSORLP00000010044	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	Zgc:56556.	0.629
Saysd1	c17h5orf22	ENSORLP00000014193	ENSORLP00000010044	Si:ch211-59d15.9.	Zgc:56556.	0.608
Saysd1	tpgs2	ENSORLP00000014193	ENSORLP00000011157	Si:ch211-59d15.9.	Tubulin polyglutamylase complex subunit 2.	0.602
Saysd1	trmt13	ENSORLP00000014193	ENSORLP00000004126	Si:ch211-59d15.9.	tRNA methyltransferase 13 homolog.	0.611
c11h1orf109	c17h5orf22	ENSORLP00000027806	ENSORLP00000010044	C19h1orf109 homolog (H. sapiens).	Zgc:56556.	0.630
c11h1orf109	cwc25	ENSORLP00000027806	ENSORLP00000023215	C19h1orf109 homolog (H. sapiens).	CWC25 spliceosome associated protein homolog.	0.743
c11h1orf109	fbxo47	ENSORLP00000027806	ENSORLP00000019493	C19h1orf109 homolog (H. sapiens).	F-box domain-containing protein.	0.697
c17h5orf22	ELOF1	ENSORLP00000010044	ENSORLP00000020714	Zgc:56556.	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	0.629
c17h5orf22	LOC101173766	ENSORLP00000010044	ENSORLP00000004473	Zgc:56556.	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	0.629
c17h5orf22	Saysd1	ENSORLP00000010044	ENSORLP00000014193	Zgc:56556.	Si:ch211-59d15.9.	0.608
c17h5orf22	c11h1orf109	ENSORLP00000010044	ENSORLP00000027806	Zgc:56556.	C19h1orf109 homolog (H. sapiens).	0.630
c17h5orf22	cwc25	ENSORLP00000010044	ENSORLP00000023215	Zgc:56556.	CWC25 spliceosome associated protein homolog.	0.606
c17h5orf22	fbxo47	ENSORLP00000010044	ENSORLP00000019493	Zgc:56556.	F-box domain-containing protein.	0.606
c17h5orf22	pqbp1	ENSORLP00000010044	ENSORLP00000018117	Zgc:56556.	Polyglutamine binding protein 1.	0.628
c17h5orf22	tpgs2	ENSORLP00000010044	ENSORLP00000011157	Zgc:56556.	Tubulin polyglutamylase complex subunit 2.	0.611
c17h5orf22	trmt13	ENSORLP00000010044	ENSORLP00000004126	Zgc:56556.	tRNA methyltransferase 13 homolog.	0.700
c17h5orf22	wbp11	ENSORLP00000010044	ENSORLP00000018789	Zgc:56556.	WW domain binding protein 11.	0.767
cwc25	c11h1orf109	ENSORLP00000023215	ENSORLP00000027806	CWC25 spliceosome associated protein homolog.	C19h1orf109 homolog (H. sapiens).	0.743
cwc25	c17h5orf22	ENSORLP00000023215	ENSORLP00000010044	CWC25 spliceosome associated protein homolog.	Zgc:56556.	0.606