STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
c17h5orf22Zgc:56556. (475 aa)    
Predicted Functional Partners:
tpgs2
Tubulin polyglutamylase complex subunit 2.
      
 0.558
LOC101175409
Limb and CNS expressed 1.
   
 0.529
LIX1L
Limb and CNS expressed 1 like.
   
 0.529
c11h1orf109
C19h1orf109 homolog (H. sapiens).
   
    0.524
trmt13
tRNA methyltransferase 13 homolog.
   
  
 0.514
cwc25
CWC25 spliceosome associated protein homolog.
   
    0.507
fbxo47
F-box domain-containing protein.
   
    0.504
Saysd1
Si:ch211-59d15.9.
      
 0.499
RUBCNL
Rubicon like autophagy enhancer.
   
    0.495
acot11
Acyl-coenzyme A thioesterase 11.
   
    0.457
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.