Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fbxl6F-box domain-containing protein. (563 aa)    
Predicted Functional Partners:
cul1
Cullin 1b; Belongs to the cullin family.
   
 0.930
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.929
faf1
Fas (TNFRSF6) associated factor 1.
   
 
 0.916
H2MG95_ORYLA
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.864
LOC101167610
Low density lipoprotein receptor-related protein 8, apolipoprotein e receptor.
   
  
 0.756
LOC101155061
Baculoviral IAP repeat containing 5a.
    
 
 0.752
ncbp3
Nuclear cap binding subunit 3.
   
  
 0.732
LOC101156565
Doublesex and mab-3 related transcription factor 2b.
      
 0.700
H2LV27_ORYLA
Uncharacterized protein.
   
  
 0.698
LOC101170932
Voltage-dependent anion channel 3.
    
 
 0.690
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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