STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paxip1PAX interacting (with transcription-activation domain) protein 1. (1107 aa)    
Predicted Functional Partners:
tp53bp1
Tumor protein p53 binding protein, 1.
    
 0.954
slf1
SMC5-SMC6 complex localization factor 1.
   
 0.929
LOC101161131
Lysine (K)-specific demethylase 6A, like.
   
 0.924
LOC101164833
Lysine (K)-specific demethylase 6B, b.
   
 0.924
H2ME95_ORYLA
Lysine (K)-specific demethylase 6A.
   
 0.924
ENSORLP00000039316
Uncharacterized protein.
   
 0.924
LOC101160692
Lysine (K)-specific demethylase 6B, a.
   
 0.924
pagr1
PAXIP1 associated glutamate-rich protein 1.
    
 0.914
topbp1
DNA topoisomerase II binding protein 1.
   
 
0.872
Atm
Uncharacterized protein.
   
 0.863
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.