STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100049265Caspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family. (265 aa)    
Predicted Functional Partners:
LOC101166883
X-linked inhibitor of apoptosis.
   
 0.982
casp8
Uncharacterized protein; Belongs to the peptidase C14A family.
  
0.972
casp9
Caspase 9, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.
    
0.970
LOC101172600
Baculoviral IAP repeat containing 2.
   
 0.969
parp1
Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.
   
 0.963
LOC100125536
Uncharacterized protein; Belongs to the peptidase C14A family.
  
0.958
LOC101155061
Baculoviral IAP repeat containing 5a.
   
 0.952
LOC101168459
Baculoviral IAP repeat containing 5b.
   
 0.948
LOC101175466
Uncharacterized protein.
   
  0.943
Sptan1
Uncharacterized protein.
    
 0.936
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.