Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
zmat5Zinc finger, matrin-type 5. (175 aa)    
Predicted Functional Partners:
rnpc3
RNA-binding region (RNP1, RRM) containing 3.
   
 0.999
zcrb1
Zinc finger CCHC-type and RNA binding motif 1.
    
 0.999
snrnp48
Small nuclear ribonucleoprotein 48 (U11/U12).
    
 0.998
pdcd7
Programmed cell death 7.
   
 0.996
sf3b1
Splicing factor 3b, subunit 1.
   
 0.996
snrpg
Small nuclear ribonucleoprotein G.
   
 0.996
snrnp25
Small nuclear ribonucleoprotein 25.
   
 0.991
snrnp35
Small nuclear ribonucleoprotein 35 (U11/U12).
   
 0.991
sf3b2
Splicing factor 3b, subunit 2.
   
 0.984
rbm41
RNA binding motif protein 41.
   
 0.984
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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