zmat5 protein (Oryzias latipes) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

zmat5

Zinc finger, matrin-type 5. (175 aa)

Predicted Functional Partners:

snrpd3

0.989

sf3b1

0.984

snrpg

0.984

snrpe

0.980

snrpd2

0.980

sf3b2

0.979

rnpc3

0.975

snrpd1

0.970

sf3b4

0.968

snrnp35

0.955

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rnpc3	sf3b1	ENSORLP00000007159	ENSORLP00000025076	RNA-binding region (RNP1, RRM) containing 3.	Splicing factor 3b, subunit 1.	0.966
rnpc3	sf3b2	ENSORLP00000007159	ENSORLP00000010339	RNA-binding region (RNP1, RRM) containing 3.	Splicing factor 3b, subunit 2.	0.959
rnpc3	sf3b4	ENSORLP00000007159	ENSORLP00000003820	RNA-binding region (RNP1, RRM) containing 3.	Splicing factor 3b, subunit 4.	0.921
rnpc3	snrnp35	ENSORLP00000007159	ENSORLP00000007132	RNA-binding region (RNP1, RRM) containing 3.	Small nuclear ribonucleoprotein 35 (U11/U12).	0.908
rnpc3	snrpd1	ENSORLP00000007159	ENSORLP00000015671	RNA-binding region (RNP1, RRM) containing 3.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.956
rnpc3	snrpd2	ENSORLP00000007159	ENSORLP00000043777	RNA-binding region (RNP1, RRM) containing 3.	Small nuclear ribonucleoprotein Sm D2.	0.932
rnpc3	snrpd3	ENSORLP00000007159	ENSORLP00000030977	RNA-binding region (RNP1, RRM) containing 3.	Small nuclear ribonucleoprotein Sm D3.	0.973
rnpc3	snrpe	ENSORLP00000007159	ENSORLP00000029192	RNA-binding region (RNP1, RRM) containing 3.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.945
rnpc3	snrpg	ENSORLP00000007159	ENSORLP00000030086	RNA-binding region (RNP1, RRM) containing 3.	Small nuclear ribonucleoprotein G.	0.972
rnpc3	zmat5	ENSORLP00000007159	ENSORLP00000010208	RNA-binding region (RNP1, RRM) containing 3.	Zinc finger, matrin-type 5.	0.975
sf3b1	rnpc3	ENSORLP00000025076	ENSORLP00000007159	Splicing factor 3b, subunit 1.	RNA-binding region (RNP1, RRM) containing 3.	0.966
sf3b1	sf3b2	ENSORLP00000025076	ENSORLP00000010339	Splicing factor 3b, subunit 1.	Splicing factor 3b, subunit 2.	0.999
sf3b1	sf3b4	ENSORLP00000025076	ENSORLP00000003820	Splicing factor 3b, subunit 1.	Splicing factor 3b, subunit 4.	0.999
sf3b1	snrnp35	ENSORLP00000025076	ENSORLP00000007132	Splicing factor 3b, subunit 1.	Small nuclear ribonucleoprotein 35 (U11/U12).	0.961
sf3b1	snrpd1	ENSORLP00000025076	ENSORLP00000015671	Splicing factor 3b, subunit 1.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.986
sf3b1	snrpd2	ENSORLP00000025076	ENSORLP00000043777	Splicing factor 3b, subunit 1.	Small nuclear ribonucleoprotein Sm D2.	0.985
sf3b1	snrpd3	ENSORLP00000025076	ENSORLP00000030977	Splicing factor 3b, subunit 1.	Small nuclear ribonucleoprotein Sm D3.	0.984
sf3b1	snrpe	ENSORLP00000025076	ENSORLP00000029192	Splicing factor 3b, subunit 1.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.994
sf3b1	snrpg	ENSORLP00000025076	ENSORLP00000030086	Splicing factor 3b, subunit 1.	Small nuclear ribonucleoprotein G.	0.987
sf3b1	zmat5	ENSORLP00000025076	ENSORLP00000010208	Splicing factor 3b, subunit 1.	Zinc finger, matrin-type 5.	0.984