klc2 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

klc2

TPR_REGION domain-containing protein. (628 aa)

Predicted Functional Partners:

LOC101165391

0.994

KIF5A

0.994

KIF5C

0.976

LOC101155960

0.976

KIF5B

0.973

fyco1

0.913

plekhm2

0.908

klc1

0.901

LOC101171520

0.901

LOC101163426

0.901

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KIF5A	KIF5B	ENSORLP00000041330	ENSORLP00000005443	Kinesin family member 5A; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.901
KIF5A	KIF5C	ENSORLP00000041330	ENSORLP00000000138	Kinesin family member 5A; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.901
KIF5A	LOC101155960	ENSORLP00000041330	ENSORLP00000002851	Kinesin family member 5A; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.901
KIF5A	LOC101163426	ENSORLP00000041330	ENSORLP00000041210	Kinesin family member 5A; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin light chain 3.	0.994
KIF5A	LOC101165391	ENSORLP00000041330	ENSORLP00000030919	Kinesin family member 5A; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin family member 5A, a; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.902
KIF5A	LOC101171520	ENSORLP00000041330	ENSORLP00000016250	Kinesin family member 5A; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	TPR_REGION domain-containing protein.	0.994
KIF5A	fyco1	ENSORLP00000041330	ENSORLP00000033748	Kinesin family member 5A; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	FYVE and coiled-coil domain containing 1a.	0.916
KIF5A	klc1	ENSORLP00000041330	ENSORLP00000016249	Kinesin family member 5A; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.994
KIF5A	klc2	ENSORLP00000041330	ENSORLP00000010212	Kinesin family member 5A; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	TPR_REGION domain-containing protein.	0.994
KIF5A	plekhm2	ENSORLP00000041330	ENSORLP00000033052	Kinesin family member 5A; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Pleckstrin homology domain containing, family M (with RUN domain) member 2.	0.926
KIF5B	KIF5A	ENSORLP00000005443	ENSORLP00000041330	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin family member 5A; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.901
KIF5B	KIF5C	ENSORLP00000005443	ENSORLP00000000138	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.901
KIF5B	LOC101155960	ENSORLP00000005443	ENSORLP00000002851	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.900
KIF5B	LOC101163426	ENSORLP00000005443	ENSORLP00000041210	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin light chain 3.	0.973
KIF5B	LOC101165391	ENSORLP00000005443	ENSORLP00000030919	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin family member 5A, a; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.901
KIF5B	LOC101171520	ENSORLP00000005443	ENSORLP00000016250	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	TPR_REGION domain-containing protein.	0.973
KIF5B	fyco1	ENSORLP00000005443	ENSORLP00000033748	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	FYVE and coiled-coil domain containing 1a.	0.910
KIF5B	klc1	ENSORLP00000005443	ENSORLP00000016249	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.973
KIF5B	klc2	ENSORLP00000005443	ENSORLP00000010212	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	TPR_REGION domain-containing protein.	0.973
KIF5B	plekhm2	ENSORLP00000005443	ENSORLP00000033052	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Pleckstrin homology domain containing, family M (with RUN domain) member 2.	0.912