Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
slc8b1Solute carrier family 8 member B1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (531 aa)    
Predicted Functional Partners:
Glrx3
Glutaredoxin 3.
   
  
 0.800
clybl
Citrate lyase beta like.
     
 0.734
micu1
Mitochondrial calcium uptake 1.
      
 0.692
rmnd1
Required for meiotic nuclear division 1 homolog.
      
 0.683
pyroxd2
Pyridine nucleotide-disulphide oxidoreductase domain 2.
      
 0.673
utp15
UTP15 small subunit processome component.
      
 0.672
iars2
Isoleucyl-tRNA synthetase 2, mitochondrial; Belongs to the class-I aminoacyl-tRNA synthetase family.
      
 0.655
tpcn2
Uncharacterized protein.
      
 0.651
serf2
Small EDRK-rich factor 2.
      
 0.650
tmem134
Transmembrane protein 134.
      
 0.649
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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