LOC101171823 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101171823

Solute carrier family 2 member 9, like 1. (476 aa)

Predicted Functional Partners:

thoc7

0.822

slc25a26

0.784

psmd6

0.754

lrig1

0.736

atxn7

0.711

magi1

0.708

prickle2

0.564

slc2a12

0.563

SLC2A6

0.562

adamts9

0.526

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101171823	SLC2A6	ENSORLP00000010223	ENSORLP00000016154	Solute carrier family 2 member 9, like 1.	Solute carrier family 2 member 6; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	0.562
LOC101171823	adamts9	ENSORLP00000010223	ENSORLP00000010146	Solute carrier family 2 member 9, like 1.	ADAM metallopeptidase with thrombospondin type 1 motif, 9.	0.526
LOC101171823	atxn7	ENSORLP00000010223	ENSORLP00000010264	Solute carrier family 2 member 9, like 1.	Ataxin 7.	0.711
LOC101171823	lrig1	ENSORLP00000010223	ENSORLP00000028378	Solute carrier family 2 member 9, like 1.	Leucine-rich repeats and immunoglobulin-like domains 1.	0.736
LOC101171823	magi1	ENSORLP00000010223	ENSORLP00000032506	Solute carrier family 2 member 9, like 1.	Membrane associated guanylate kinase, WW and PDZ domain containing 1b.	0.708
LOC101171823	prickle2	ENSORLP00000010223	ENSORLP00000010202	Solute carrier family 2 member 9, like 1.	Prickle homolog 2b.	0.564
LOC101171823	psmd6	ENSORLP00000010223	ENSORLP00000010246	Solute carrier family 2 member 9, like 1.	Proteasome 26S subunit, non-ATPase 6.	0.754
LOC101171823	slc25a26	ENSORLP00000010223	ENSORLP00000029212	Solute carrier family 2 member 9, like 1.	Solute carrier family 25 member 26; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.784
LOC101171823	slc2a12	ENSORLP00000010223	ENSORLP00000020670	Solute carrier family 2 member 9, like 1.	Solute carrier family 2 member 12; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	0.563
LOC101171823	thoc7	ENSORLP00000010223	ENSORLP00000028126	Solute carrier family 2 member 9, like 1.	THO complex 7.	0.822
SLC2A6	LOC101171823	ENSORLP00000016154	ENSORLP00000010223	Solute carrier family 2 member 6; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	Solute carrier family 2 member 9, like 1.	0.562
adamts9	LOC101171823	ENSORLP00000010146	ENSORLP00000010223	ADAM metallopeptidase with thrombospondin type 1 motif, 9.	Solute carrier family 2 member 9, like 1.	0.526
adamts9	atxn7	ENSORLP00000010146	ENSORLP00000010264	ADAM metallopeptidase with thrombospondin type 1 motif, 9.	Ataxin 7.	0.502
adamts9	lrig1	ENSORLP00000010146	ENSORLP00000028378	ADAM metallopeptidase with thrombospondin type 1 motif, 9.	Leucine-rich repeats and immunoglobulin-like domains 1.	0.655
adamts9	magi1	ENSORLP00000010146	ENSORLP00000032506	ADAM metallopeptidase with thrombospondin type 1 motif, 9.	Membrane associated guanylate kinase, WW and PDZ domain containing 1b.	0.485
adamts9	psmd6	ENSORLP00000010146	ENSORLP00000010246	ADAM metallopeptidase with thrombospondin type 1 motif, 9.	Proteasome 26S subunit, non-ATPase 6.	0.604
adamts9	slc25a26	ENSORLP00000010146	ENSORLP00000029212	ADAM metallopeptidase with thrombospondin type 1 motif, 9.	Solute carrier family 25 member 26; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.500
adamts9	thoc7	ENSORLP00000010146	ENSORLP00000028126	ADAM metallopeptidase with thrombospondin type 1 motif, 9.	THO complex 7.	0.503
atxn7	LOC101171823	ENSORLP00000010264	ENSORLP00000010223	Ataxin 7.	Solute carrier family 2 member 9, like 1.	0.711
atxn7	adamts9	ENSORLP00000010264	ENSORLP00000010146	Ataxin 7.	ADAM metallopeptidase with thrombospondin type 1 motif, 9.	0.502