STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
abca3ATP-binding cassette, sub-family A (ABC1), member 3b. (1708 aa)    
Predicted Functional Partners:
LPCAT1
Lysophosphatidylcholine acyltransferase 1.
   
 
 0.759
ENSORLP00000040042
Uncharacterized protein.
 
  
 
 0.696
myadml2
Myeloid-associated differentiation marker-like 2.
   
  
 0.655
MYADML2
Myeloid associated differentiation marker like 2.
   
  
 0.655
hopx
Homeobox domain-containing protein.
   
  
 0.649
nr1h4
Nuclear receptor subfamily 1, group H, member 4.
    
 0.623
lamp3
Uncharacterized protein.
   
 
 0.614
LOC101173307
Transmembrane channel-like protein.
    
 
 0.592
PCYT2
Phosphate cytidylyltransferase 2, ethanolamine.
      
 0.551
pcyt2
Phosphate cytidylyltransferase 2, ethanolamine.
      
 0.551
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.