Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
kiaa0556Uncharacterized protein. (1630 aa)    
Predicted Functional Partners:
ift27
Intraflagellar transport 27.
    
 0.763
ift52
Intraflagellar transport 52 homolog (Chlamydomonas).
    
 0.741
LOC101169647
Katanin_con80 domain-containing protein.
    
 
 0.723
katnbl1
Katanin p80 subunit B-like 1.
    
 
 0.723
katnal2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
    
 0.718
katnb1
Katanin p80 WD40 repeat-containing subunit B1; Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.
    
 
 0.713
recql5
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
    
 0.711
cep104
Centrosomal protein 104.
      
 0.693
mei1
Meiotic double-stranded break formation protein 1.
      
 0.690
ift172
Intraflagellar transport 172.
    
 0.663
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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