STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cryba4Crystallin, beta A4; Belongs to the beta/gamma-crystallin family. (210 aa)    
Predicted Functional Partners:
LOC101166967
Crystallin, beta B2; Belongs to the beta/gamma-crystallin family.
   
   0.750
cryaa
Alpha-crystallin A chain; May contribute to the transparency and refractive index of the lens; Belongs to the small heat shock protein (HSP20) family.
   
 
 0.749
BFSP1
Beaded filament structural protein 1; Belongs to the intermediate filament family.
      
 0.748
lgsn
Lengsin, lens protein with glutamine synthetase domain; Belongs to the glutamine synthetase family.
      
 0.702
cep76
Centrosomal protein 76.
    
   0.676
ddb2
Damage-specific DNA binding protein 2.
    
 
 0.619
pik3ip1
Phosphoinositide-3-kinase interacting protein 1.
      
 0.594
TMEM43
Uncharacterized protein.
      
 0.575
themis2
Thymocyte selection associated family member 2.
      
 0.572
ENSORLP00000040040
Uncharacterized protein.
   
  
 0.567
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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