STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101171851Crystallin, beta A1a; Belongs to the beta/gamma-crystallin family. (197 aa)    
Predicted Functional Partners:
cryaa
Alpha-crystallin A chain; May contribute to the transparency and refractive index of the lens; Belongs to the small heat shock protein (HSP20) family.
   
 
 0.849
LOC101169800
Crystallin, alpha B, a; Belongs to the small heat shock protein (HSP20) family.
   
 
 0.712
BFSP1
Beaded filament structural protein 1; Belongs to the intermediate filament family.
   
  
 0.655
bfsp2
Beaded filament structural protein 2, phakinin; Belongs to the intermediate filament family.
   
  
 0.549
LOC101166967
Crystallin, beta B2; Belongs to the beta/gamma-crystallin family.
   
  
0.520
cryba2
Crystallin, beta A2b; Belongs to the beta/gamma-crystallin family.
  
  
0.520
LOC101173533
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
  
   
 0.476
LOC101166150
Heat shock protein, alpha-crystallin-related, b15; Belongs to the small heat shock protein (HSP20) family.
   
 
 0.476
LOC101158106
Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.
   
  
 0.471
LOC101158659
Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.
   
  
 0.471
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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