Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ankrd34cANK_REP_REGION domain-containing protein. (539 aa)    
Predicted Functional Partners:
LOC101167215
Family with sequence similarity 151 member B.
      
 0.647
syngr3
Synaptogyrin.
   
  
 0.551
LOC101160102
Family with sequence similarity 110 member B.
      
 0.491
H2L587_ORYLA
DUF3480 domain-containing protein.
      
 0.429
zfyve9
Zinc finger, FYVE domain containing 9a.
      
 0.429
Zfyve9
SARA domain-containing protein.
      
 0.429
ift81
Intraflagellar transport 81 homolog.
    
 0.429
fmod
Fibromodulin a.
    
 0.425
spata5l1
Spermatogenesis associated 5-like 1.
    
 0.415
tmem145
Transmembrane protein 145.
   
 
 0.410
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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