tpcn1 protein (Oryzias latipes) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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co-expression

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gene fusions

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[Homology]

Score

tpcn1

Two pore segment channel 1. (815 aa)

Predicted Functional Partners:

tpcn2

0.922

LOC101168676

0.900

LOC101168159

0.900

LOC101168658-2

0.900

Unc79

0.866

mettl27

0.764

LOC101173946

0.635

LOC101166566

0.599

IFT122

0.548

wdr35

0.547

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
IFT122	tpcn1	ENSORLP00000013850	ENSORLP00000010255	Intraflagellar transport 122.	Two pore segment channel 1.	0.548
IFT122	tpcn2	ENSORLP00000013850	ENSORLP00000045610	Intraflagellar transport 122.	Uncharacterized protein.	0.548
IFT122	wdr35	ENSORLP00000013850	ENSORLP00000040918	Intraflagellar transport 122.	WD repeat-containing protein 35.	0.999
LOC101166566	LOC101173946	ENSORLP00000001336	ENSORLP00000032754	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	Uncharacterized protein.	0.599
LOC101166566	tpcn1	ENSORLP00000001336	ENSORLP00000010255	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	Two pore segment channel 1.	0.599
LOC101168159	LOC101168658-2	ENSORLP00000026770	ENSORLP00000038770	Uncharacterized protein.	Uncharacterized protein.	0.911
LOC101168159	LOC101168676	ENSORLP00000026770	ENSORLP00000015875	Uncharacterized protein.	CD38 molecule.	0.909
LOC101168159	tpcn1	ENSORLP00000026770	ENSORLP00000010255	Uncharacterized protein.	Two pore segment channel 1.	0.900
LOC101168159	tpcn2	ENSORLP00000026770	ENSORLP00000045610	Uncharacterized protein.	Uncharacterized protein.	0.902
LOC101168658-2	LOC101168159	ENSORLP00000038770	ENSORLP00000026770	Uncharacterized protein.	Uncharacterized protein.	0.911
LOC101168658-2	LOC101168676	ENSORLP00000038770	ENSORLP00000015875	Uncharacterized protein.	CD38 molecule.	0.900
LOC101168658-2	tpcn1	ENSORLP00000038770	ENSORLP00000010255	Uncharacterized protein.	Two pore segment channel 1.	0.900
LOC101168658-2	tpcn2	ENSORLP00000038770	ENSORLP00000045610	Uncharacterized protein.	Uncharacterized protein.	0.902
LOC101168676	LOC101168159	ENSORLP00000015875	ENSORLP00000026770	CD38 molecule.	Uncharacterized protein.	0.909
LOC101168676	LOC101168658-2	ENSORLP00000015875	ENSORLP00000038770	CD38 molecule.	Uncharacterized protein.	0.900
LOC101168676	tpcn1	ENSORLP00000015875	ENSORLP00000010255	CD38 molecule.	Two pore segment channel 1.	0.900
LOC101168676	tpcn2	ENSORLP00000015875	ENSORLP00000045610	CD38 molecule.	Uncharacterized protein.	0.902
LOC101173946	LOC101166566	ENSORLP00000032754	ENSORLP00000001336	Uncharacterized protein.	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	0.599
LOC101173946	mettl27	ENSORLP00000032754	ENSORLP00000003696	Uncharacterized protein.	Methyltransferase like 27.	0.914
LOC101173946	tpcn1	ENSORLP00000032754	ENSORLP00000010255	Uncharacterized protein.	Two pore segment channel 1.	0.635