STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpdCarboxypeptidase D, a. (1360 aa)    
Predicted Functional Partners:
gak
Cyclin G associated kinase.
    
  0.954
igf2r
Insulin-like growth factor 2 receptor.
   
 
 0.686
LOC101172824
Uncharacterized protein.
     
 0.655
ap1g1
AP-1 complex subunit gamma.
   
 
 0.638
LOC101169531
Sortilin.
     
 0.628
LOC101158853
Sortilin.
     
 0.628
yipf6
Protein YIPF.
   
 
  0.623
ap4e1
AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.
   
 
  0.616
slc26a5
Solute carrier family 26 member 5.
   
  
 0.561
ccdc186
Si:ch211-225b10.4.
      
 0.560
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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