STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccnfCyclin F; Belongs to the cyclin family. (762 aa)    
Predicted Functional Partners:
cul1
Cullin 1b; Belongs to the cullin family.
    
 0.992
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.986
cdc6
Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family.
   
 0.975
H2MG95_ORYLA
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.962
ccp110
Uncharacterized protein.
    
 
 0.942
LOC101171642
Uncharacterized protein.
    
 
 0.942
nusap1
Nucleolar and spindle associated protein 1.
   
 
 0.928
sqstm1
Sequestosome 1.
    
 
 0.916
skp2
S-phase kinase-associated protein 2, E3 ubiquitin protein ligase.
   
 0.907
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
    
 
 0.892
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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