STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atxn7Ataxin 7. (940 aa)    
Predicted Functional Partners:
LOC101172905
Ubiquitin carboxyl-terminal hydrolase.
    
 0.954
LOC101159038
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.952
taf10
Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.
    
 0.952
trrap
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.951
tada3
Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.
    
 0.949
LOC101173720
Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]
    
 0.931
taf12
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.930
taf6
TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.915
supt3h
SPT3 homolog, SAGA and STAGA complex component.
    
 0.915
supt20h
SPT20 homolog, SAGA complex component.
    
 0.908
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.