Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162276Zgc:172302. (2382 aa)    
Predicted Functional Partners:
LOC101159016
Uncharacterized protein.
    
 0.909
LOC101175028
Uncharacterized protein.
    
 0.909
nr1h3
Nuclear receptor subfamily 1, group H, member 3.
    
 0.784
sun1
SUN domain-containing protein.
    
 
 0.753
LOC101161189
Uncharacterized protein.
    
 0.648
LOC101161439
Uncharacterized protein.
    
 0.648
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
   
  
 0.591
nr1h4
Nuclear receptor subfamily 1, group H, member 4.
    
 0.543
LOC101169721
Apolipoprotein A-Ib.
    
 0.500
drosha
Drosha ribonuclease III.
   
 
 0.497
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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