STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
r3hdm4R3H domain containing 4. (255 aa)    
Predicted Functional Partners:
ERG28
Ergosterol biosynthesis 28 homolog.
   
 
 0.898
LSS
Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.
   
 
 0.852
LOC101157258
Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.
   
 
 0.852
ndufaf6
NADH:ubiquinone oxidoreductase complex assembly factor 6.
   
 
 0.786
fdft1
Farnesyl-diphosphate farnesyltransferase 1.
   
 
 0.786
tm7sf2
Transmembrane 7 superfamily member 2.
   
 
 0.638
dhcr7
7-dehydrocholesterol reductase.
   
 
 0.638
lbr
Lamin B receptor.
   
 
 0.638
faxdc2
Fatty acid hydroxylase domain containing 2; Belongs to the sterol desaturase family.
   
 0.616
LOC101168135
Cholesterol 25-hydroxylase like 2; Belongs to the sterol desaturase family.
   
 0.616
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.