Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100301585Stromal antigen 2b. (1272 aa)    
Predicted Functional Partners:
rad21
Uncharacterized protein.
   
 0.984
LOC101173147
RAD21 cohesin complex component like 1.
   
 0.984
smc3
Structural maintenance of chromosomes protein.
   
 0.981
smc1a
Structural maintenance of chromosomes protein.
   
 0.970
espl1
Extra spindle pole bodies like 1, separase.
   
 0.966
smc1b
Structural maintenance of chromosomes protein.
   
 0.932
LOC101173396
SCD domain-containing protein.
  
  
 
0.904
stag1
Stromal antigen 1a.
  
  
 
0.901
LOC101158626
Stromal antigen 2a.
  
  
 
0.901
ENSORLP00000028463
Rad21_Rec8_N domain-containing protein.
   
 0.853
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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