Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101166401Uncharacterized protein. (815 aa)    
Predicted Functional Partners:
olklklp
Kallikrein like protein; Belongs to the peptidase S1 family.
     
 0.617
susd1
Sushi domain containing 1.
     
 0.611
fau
40S ribosomal protein S30.
      
 0.551
qser1
Glutamine and serine rich 1.
      
 0.498
LOC101168626
Transmembrane p24 trafficking protein 7.
      
 0.477
upb1
Ureidopropionase, beta.
      
 0.475
gucd1
Guanylyl cyclase domain containing 1.
      
 0.473
LOC101169804
Epithelial cell adhesion molecule.
      
 0.464
tsr1
TSR1 ribosome maturation factor.
      
 0.443
LOC101155594
Si:ch73-60h1.1.
      
 0.431
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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