STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162956Si:dkey-181m9.8. (768 aa)    
Predicted Functional Partners:
LOC101166217
RanBP-type and C3HC4-type zinc finger containing 1.
   
 0.988
LOC101169745
Sharpin and rbck1 related.
   
 0.988
ripk1
Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.
    
 0.970
sharpin
SHANK-associated RH domain interacting protein.
    
 0.968
LOC101172600
Baculoviral IAP repeat containing 2.
    
 0.956
LOC101166883
X-linked inhibitor of apoptosis.
    
 0.952
LOC101164686
OTU deubiquitinase with linear linkage specificity a.
    
 0.934
ripk2
Receptor-interacting serine-threonine kinase 2.
    
 0.927
spata2
Spermatogenesis associated 2.
     
  0.922
tnfrsf1a
Tumor necrosis factor receptor superfamily, member 1a.
    
 0.921
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.