STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nbeal2Neurobeachin-like 2. (2807 aa)    
Predicted Functional Partners:
exosc3
Exosome component 3.
      
 0.682
zmynd10
Zinc finger, MYND-type containing 10.
      
 0.593
armc4
Armadillo repeat containing 4.
      
 0.570
mastl
Microtubule associated serine/threonine kinase-like.
      
 0.511
PUF60
Poly-U binding splicing factor b.
      
 0.505
dstyk
Protein kinase domain-containing protein.
    
 
 0.471
ttc21b
Tetratricopeptide repeat domain 21B.
      
 0.440
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.