STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101165797CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 3. (381 aa)    
Predicted Functional Partners:
LOC101172961
Serine/threonine kinase 35; Belongs to the protein kinase superfamily.
   
 
 0.637
pdik1l
PDLIM1 interacting kinase 1 like; Belongs to the protein kinase superfamily.
   
 
 0.637
gtf2f1
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.597
cnep1r1
CTD nuclear envelope phosphatase 1 regulatory subunit 1.
   
 0.564
polr2g
Polymerase (RNA) II (DNA directed) polypeptide G-like.
    
 0.545
polr2d
Polymerase (RNA) II (DNA directed) polypeptide D.
    
 0.544
H2M6T1_ORYLA
Lipin_N domain-containing protein.
    
 0.542
lpin1
Si:ch73-21k16.1.
    
 0.542
LOC101161835
Lipin 2.
    
 0.542
LOC101174419
Zgc:123305.
    
 0.542
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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